palmettoBUG documentation

Contents:

• Welcome to PalmettoBUG!
• Launching PalmettoBUG
• Image Processing
• Single-Cell Analysis
• Spatial Analysis
• Making a Pixel Classifier
• Using a Pixel Classifier
• Understanding the PalmettoBUG Interface
• Advanced PalmettoBUG and its Directory Structure
• Bead Normalization Option
• Glossary
• FAQ / Common Errors
• Citing & Acknowledgements

Tutorials (outside GUI):

• Tutorial Notebooks
  • Core Imaging Pipeline Tutorials
  • Pixel Classification Notebooks
  • Alternate Entrypoints to PalmettoBUG Tutorials
  • Example of Launching GUIs from script

API:

• API Reference