palmettobug

Contents:

  • Welcome to PalmettoBUG!
  • Launching PalmettoBUG
  • Image Processing
  • Single-Cell Analysis
  • Spatial Analysis
  • Making a Pixel Classifier
  • Using a Pixel Classifier
  • Understanding the PalmettoBUG Interface
  • Advanced PalmettoBUG and its Directory Structure
  • Bead Normalization Option
  • Glossary
  • FAQ / Common Errors
  • Citing & Acknowledgements

Tutorials (outside GUI):

  • Tutorial Notebooks

API:

  • API Reference
    • palmettobug
palmettobug
  • API Reference
  • View page source

API Reference

This page contains auto-generated API reference documentation [1].

  • palmettobug
    • palmettobug.Analysis_functions
      • palmettobug.Analysis_functions.Analysis
      • palmettobug.Analysis_functions.SpatialAnalysis
      • palmettobug.Analysis_functions.WholeClassAnalysis
    • palmettobug.Entrypoint
      • palmettobug.Entrypoint.bead_norm
    • palmettobug.Executable
    • palmettobug.ImageProcessing
      • palmettobug.ImageProcessing.ImageAnalysisClass
    • palmettobug.Pixel_Classification
      • palmettobug.Pixel_Classification.Classifiers
      • palmettobug.Pixel_Classification.use_classifiers
    • palmettobug.Utils
      • palmettobug.Utils.sharedClasses
[1]

Created with sphinx-autoapi

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