.. palmettoBUG documentation master file, created by
   sphinx-quickstart on Wed Nov  6 12:39:27 2024.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

palmettoBUG documentation
=========================

.. toctree::
   :maxdepth: 1
   :caption: Contents:

   WelcometoPalmettoBUG
   LoadingData
   ImageProcessing
   SingleCellAnalysis
   SpatialAnalysis
   MakingPixelClassifier
   UsingPixelClassifier
   TheInterface
   AdvancedPalmettoBUG
   bead_norm
   Glossary
   FAQ
   Citing&Acknowledgements

.. toctree::
   :maxdepth: 2
   :caption: Tutorials (outside GUI):

   notebooks/index.rst

.. toctree::
   :maxdepth: 1
   :caption: API: